Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs6944878 chr7:148763252 T/C 4.44E-7 292 5.53 18.53 23.83 KM Plot
CESC rs7001453 chr8:22472950 C/T 5.0E-5 299 21.73 20.65 9.68 KM Plot
CESC rs7029256 chr9:136263655 T/C 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs7029386 chr9:136263736 T/C 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs7040821 chr9:136263584 C/A 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs7042326 chr9:136266636 T/C 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs7068651 chr10:88160039 A/G 2.54E-14 294 3.33 24.6 21.13 KM Plot
CESC rs7076167 chr10:135056273 T/C 1.75E-14 296 21.73 18.23 3.33 KM Plot
CESC rs7080866 chr10:88152150 C/T 2.75E-14 294 3.33 24.6 21.2 KM Plot
CESC rs7082608 chr10:88155199 T/A 2.08E-14 296 3.33 24.3 21.17 KM Plot
CESC rs7090486 chr10:19740635 A/G 0 299 0.47 21.4 21.2 KM Plot
CESC rs7093222 chr10:88209670 T/C 1.18E-14 298 3.33 24.9 21.17 KM Plot
CESC rs7094269 chr10:88203208 T/C 1.18E-14 298 3.33 24.9 21.17 KM Plot
CESC rs7095657 chr10:88168070 T/C 3.41E-14 291 3.33 23.02 21.17 KM Plot
CESC rs7096427 chr10:88215574 T/A 1.18E-14 298 3.33 24.9 21.17 KM Plot